Truncating and Mapping
| |
Read 1 |
Read 2 |
| Total Reads |
138217259 |
138217259 |
| Not Truncated |
119486648 |
114490685 |
| Truncated |
18730611 |
23726574 |
| Too short to map |
2700879 |
3655037 |
| Average length of truncated sequence |
39.14 |
38.25 |
| |
Read 1 |
Read 2 |
| Unique Alignments |
126689345 |
123427546 |
| Multiple Alignments |
7337243 |
7891314 |
| Failed To Align |
1489792 |
3243362 |
| Paired |
115401118 |
115401118 |
Filtering
| |
Di-Tag Count |
| Valid Pairs |
106426716 |
| Invalid Pairs |
8974402 |
| Same Circularised |
997988 |
| Same Fragment Dangling Ends |
279056 |
| Same Fragment Internal |
761325 |
| Re-ligation |
6936033 |
| Contiguous Sequence |
0 |
| Wrong Size |
0 |
| Total Pairs |
115401118 |
Di-tag length Distribution
De-duplication
Percentage uniques: 42.93
| |
All Di-Tags |
Unique Di-Tags |
| Read Pairs |
106426716 |
45693912 |
| Cis-close (< 10Kbp) |
12028414 |
5150715 |
| Cis-far (> 10Kbp) |
77869694 |
33338497 |
| Trans |
16528608 |
7204700 |
