# R script for Peak Model
#  -- generated by MACS
p <- c(0.029707805698514566,0.03490173380635631,0.04002250799718621,0.044953082003785276,0.0500080176693045,0.05034452568755904,0.050688349097514754,0.05045425656307682,0.05075418762282543,0.05125894965020723,0.05147109600954161,0.05136868052572501,0.05145646522613924,0.051712503935680734,0.051939281078417485,0.05185149637800326,0.05177102706929022,0.052041696562234084,0.05229773527177558,0.05236357379708625,0.05240015075559218,0.05256840476471945,0.0528463896493645,0.05312437453400955,0.05301464365849177,0.05336578246014867,0.05352672107757475,0.05399490614645063,0.05359255960288543,0.05331457471824037,0.05344625176886171,0.05359987499458661,0.05331457471824037,0.05292685895807754,0.05299269748338821,0.0524367277140981,0.05280249729915738,0.05276592034065146,0.053146320709113105,0.05373155204520795,0.05368765969500084,0.05403879849665774,0.05392175222943878,0.05403879849665774,0.05436799112321109,0.054894699325696454,0.054792283841879855,0.054602083657649035,0.05452892974063717,0.05428752181449805,0.05428752181449805,0.05379739057051862,0.05425826024769331,0.05488006854229408,0.05443382964852177,0.05455087591574073,0.054894699325696454,0.055201945777146245,0.05547261527009011,0.05523120734395099,0.05559697692901027,0.0561895236568063,0.05633583149083001,0.05632120070742764,0.057052739877546194,0.057133209186259235,0.05673086264269403,0.056804016559705885,0.05715515536136279,0.05752824033812326,0.05741119407090429,0.0573014631953865,0.057564817296629184,0.057747702089158824,0.05748434798791614,0.05744777102941022,0.05766723278044578,0.05790132531488372,0.05785743296467661,0.05785743296467661,0.05844997969247264,0.05901326485346393,0.0593790344385232,0.05934977287171846,0.05941561139702913,0.05978138098208841,0.06008131204183702,0.060103258216940576,0.060461712410298664,0.06106888992149707,0.06106888992149707,0.06122982853892315,0.061010366787887585,0.061602913515683616,0.06231250651069861,0.06256854522024011,0.06300015333061006,0.0628757916716899,0.06256854522024011,0.06243686816961877,0.06286847627998872,0.06270753766256264,0.06250270669492944,0.06253196826173418,0.06234176807750336,0.062488075911527066,0.06259049139534366,0.06329276899865748,0.06360001545010727,0.0642949776617199,0.0641925621779033,0.0641925621779033,0.06507772457374676,0.0650557783986432,0.06560443277623211,0.06585315609407243,0.06610919480361392,0.06661395683099572,0.06720650355879175,0.06688462632393959,0.06730160365090716,0.06779905028658778,0.06782099646169135,0.0679965658625198,0.06764542706086289,0.06782099646169135,0.06797461968741624,0.06787220420359964,0.06748448844343681,0.06757227314385103,0.06779905028658778,0.06866958189902887,0.06864032033222413,0.06889635904176562,0.0695108519446652,0.06940112106914742,0.0693572287189403,0.06940843646084861,0.06997903701354108,0.07044722208241695,0.0706813146168549,0.07008145249735769,0.07009608328076006,0.07035212199030155,0.07061547609154423,0.07105439959361536,0.07117144586083433,0.07097393028490231,0.07076178392556794,0.0708788301927869,0.07033017581519799,0.07011071406416242,0.07095929950149994,0.07076909931726913,0.07052037599942881,0.07035212199030155,0.07079104549237268,0.07138359222016871,0.07183714650564221,0.0716908386716185,0.07218828530729912,0.07232727774962165,0.07159573857950309,0.07205660825667778,0.07253942410895603,0.07236385470812758,0.07229801618281691,0.07225412383260979,0.07180056954713629,0.07186640807244696,0.0714933230956865,0.07197613894796474,0.07248821636704773,0.07238580088323113,0.07229070079111571,0.07290519369401531,0.0725540548923584,0.07229801618281691,0.07239311627493232,0.07266378576787619,0.07313928622845324,0.07330754023758052,0.07337337876289118,0.07362210208073149,0.07384887922346825,0.07405371019110144,0.07445605673466664,0.07462431074379391,0.07527538060519944,0.07466088770229984,0.07449994908487376,0.0745292106516785,0.07462431074379391,0.07418538724172279,0.07388545618197417,0.07380498687326113,0.07379767148155994,0.07362941747243268,0.07354894816371964,0.07455847221848325,0.07409760254130855,0.07365136364753623,0.07308076309484376,0.07291250908571649,0.07289056291061294,0.07263452420107144,0.0724004316666335,0.07278814742679633,0.07267110115957737,0.07183714650564221,0.07216633913219557,0.07242969323343824,0.07297103221932598,0.07333680180438526,0.0732124401454651,0.07302955535293547,0.07335143258778763,0.07324170171226985,0.07338800954629356,0.0741195487164121,0.07403907940769906,0.07434632585914887,0.07436827203425242,0.07458773378528799,0.07469746466080578,0.07485108788653067,0.07502665728735912,0.0751949112964864,0.07511444198777335,0.07460236456869036,0.0753851114807172,0.07506323424586504,0.07512907277117571,0.07485840327823186,0.07483645710312829,0.07486571866993304,0.0745292106516785,0.07414149489151567,0.07384156383176706,0.07376840991475521,0.07319780936206273,0.07327096327907459,0.07307344770314257,0.07278814742679633,0.07306613231144139,0.07324901710397103,0.07334411719608644,0.07322707092886747,0.07342458650479948,0.07340995572139711,0.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m <- 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ycorr <- 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altd  <- c(207)
x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf('P_P2F3_hg38_callpeaks_model.pdf',height=6,width=6)
plot(x,p,type='l',col=c('red'),main='Peak Model',xlab='Distance to the middle',ylab='Percentage')
lines(x,m,col=c('blue'))
legend('topleft',c('forward tags','reverse tags'),lty=c(1,1,1),col=c('red','blue'))
plot(xcorr,ycorr,type='l',col=c('black'),main='Cross-Correlation',xlab='Lag between + and - tags',ylab='Correlation')
abline(v=altd,lty=2,col=c('red'))
legend('topleft','alternative lag(s)',lty=2,col='red')
legend('right','alt lag(s) : 207',bty='n')
dev.off()