# R script for Peak Model
#  -- generated by MACS
p <- c(0.02894475019632442,0.033883095459624896,0.0390633188582707,0.04428385527947406,0.04896016589615043,0.04898032240742921,0.04972611332474397,0.05029049564054974,0.050814564933797955,0.051137069114258395,0.05180223398645805,0.05206426863308215,0.05147972980599761,0.05186270352029438,0.052628650948887926,0.05242708583610015,0.052205364212033596,0.05234645979098504,0.05244724234737893,0.05206426863308215,0.0517619209639005,0.05154019933983394,0.052306146768427486,0.05160066887367028,0.0513991037608825,0.0515805123623915,0.05149988631727639,0.051459573294718834,0.050754095399961625,0.05133863422704617,0.05117738213681595,0.0517619209639005,0.05156035585111272,0.05192317305413072,0.05147972980599761,0.05238677281354259,0.05281005955039692,0.052144894678197266,0.05293099861806959,0.052789903039118145,0.05313256373085736,0.05299146815190592,0.05341475488876025,0.05353569395643291,0.05456367603165056,0.05472492812188078,0.05474508463315956,0.05555134508431066,0.05545056252791677,0.05621650995651031,0.055793223219655984,0.05593431879860743,0.056418075069298086,0.05653901413697075,0.056518857625691976,0.05659948367080708,0.05659948367080708,0.05643823158057686,0.05649870111441319,0.05567228415198332,0.05581337973093476,0.05591416228732865,0.05549087555047432,0.055410249505359215,0.055470719039195544,0.0553296234602441,0.05484586718955344,0.0553296234602441,0.05522884090385022,0.055410249505359215,0.055954475309886204,0.05539009299408044,0.05567228415198332,0.05583353624221354,0.05597463182116498,0.05599478833244376,0.0569421443625463,0.05670026622720097,0.056962300873825075,0.05718402249789163,0.05720417900917041,0.0581918480618305,0.057768561324976174,0.057546839700909624,0.05752668318963085,0.05734527458812185,0.05742590063323696,0.05794996992648517,0.0575669962121884,0.058292630618224386,0.05825231759566683,0.05752668318963085,0.05778871783625495,0.05831278712950316,0.05815153503927294,0.05875623037763627,0.058776386888915046,0.05847403921973338,0.05875623037763627,0.05823216108438806,0.058494195731012166,0.05867560433252116,0.05895779549042404,0.05907873455809671,0.05930045618216326,0.058977952001702826,0.05883685642275138,0.05883685642275138,0.058715917355078716,0.05841356968589705,0.05911904758065426,0.059743899430296364,0.06004624709947803,0.06093313359574423,0.061235481264925895,0.06157814195666511,0.062142524272470884,0.06252549798676765,0.06300925425745832,0.06353332355070652,0.06278753263339176,0.06319066285896731,0.06353332355070652,0.06274721961083421,0.06218283729502844,0.062142524272470884,0.06190064613712555,0.061497515911550005,0.06145720288899245,0.06224330682886477,0.06308988030257343,0.06252549798676765,0.06258596752060398,0.06313019332513098,0.06401707982139719,0.0640977058665123,0.06518615747556628,0.0656094442124206,0.06593194839288104,0.0651660009642875,0.06450083609208784,0.06502490538533606,0.06518615747556628,0.06504506189661484,0.06490396631766339,0.0647225577161544,0.06413801888906985,0.06440005353569396,0.06476287073871195,0.06532725305451773,0.06577069630265082,0.06643586117485048,0.06665758279891704,0.06716149558088647,0.06700024349065625,0.06780650394180734,0.06812900812226778,0.06792744300948,0.0679475995207588,0.06859260788167966,0.06903605112981277,0.06806853858843145,0.06841119928017067,0.06831041672377679,0.06849182532528578,0.06879417299446744,0.06790728649820123,0.06835072974633434,0.06822979067866167,0.06818947765610411,0.0670405565132138,0.0674839997613469,0.06736306069367425,0.06750415627262568,0.06806853858843145,0.06754446929518323,0.06822979067866167,0.06766540836285591,0.06863292090423723,0.06831041672377679,0.06966090297945488,0.07002372018247287,0.06933839879899444,0.06935855531027321,0.06835072974633434,0.06867323392679478,0.06949965088922465,0.06996325064863654,0.06806853858843145,0.0683910427688919,0.06792744300948,0.06808869509971023,0.06887479903958255,0.06871354694935233,0.0696407464681761,0.0694593378666671,0.06829026021249801,0.06903605112981277,0.07036638087421208,0.06966090297945488,0.0694593378666671,0.06911667717492788,0.06796775603203757,0.06887479903958255,0.06933839879899444,0.06937871182155199,0.06978184204712753,0.06873370346063111,0.06903605112981277,0.06905620764109155,0.06994309413735776,0.07032606785165453,0.07085013714490274,0.06966090297945488,0.06943918135538832,0.06986246809224264,0.07014465925014553,0.07034622436293331,0.0699027811148002,0.07089045016746029,0.07034622436293331,0.07000356367119409,0.06943918135538832,0.0694593378666671,0.06943918135538832,0.06976168553584876,0.06998340715991531,0.06998340715991531,0.0700841897163092,0.06937871182155199,0.06913683368620666,0.07010434622758797,0.07095091970129663,0.07117264132536318,0.0706284155208362,0.06984231158096386,0.06956012042306098,0.06992293762607898,0.07010434622758797,0.07093076319001786,0.07060825900955742,0.0694593378666671,0.06931824228771566,0.06958027693433975,0.06994309413735776,0.06966090297945488,0.06980199855840631,0.06966090297945488,0.06915699019748543,0.06921745973132176,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m <- 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ycorr <- 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altd  <- c(207)
x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf('T1P_P2F3_hg38_callpeaks_model.pdf',height=6,width=6)
plot(x,p,type='l',col=c('red'),main='Peak Model',xlab='Distance to the middle',ylab='Percentage')
lines(x,m,col=c('blue'))
legend('topleft',c('forward tags','reverse tags'),lty=c(1,1,1),col=c('red','blue'))
plot(xcorr,ycorr,type='l',col=c('black'),main='Cross-Correlation',xlab='Lag between + and - tags',ylab='Correlation')
abline(v=altd,lty=2,col=c('red'))
legend('topleft','alternative lag(s)',lty=2,col='red')
legend('right','alt lag(s) : 207',bty='n')
dev.off()