#!/bin/bash #$ -cwd -V module load EBModules-LegacyBNB GCC/7.3.0-2.30 OpenMPI/3.1.1 SAMtools/1.9 samtools view -Sb -o P_H3K27ac_hg38.bam P_H3K27ac_hg38.sam samtools sort -O bam -o P_H3K27ac_hg38.bam_sorted.bam P_H3K27ac_hg38.bam samtools index P_H3K27ac_hg38.bam_sorted.bam samtools view -Sb -o P_HA_hg38.bam P_HA_hg38.sam samtools sort -O bam -o P_HA_hg38_sorted.bam P_HA_hg38.bam samtools index P_HA_hg38_sorted.bam samtools view -Sb -o P_IgG_hg38.bam P_IgG_hg38.sam samtools sort -O bam -o P_IgG_hg38_sorted.bam P_IgG_hg38.bam samtools index P_IgG_hg38_sorted.bam samtools view -Sb -o P_P2F3_hg38.bam P_P2F3_hg38.sam samtools sort -O bam -o P_P2F3_hg38_sorted.bam P_P2F3_hg38.bam samtools index P_P2F3_hg38_sorted.bam samtools view -Sb -o T1P_H3K27ac_hg38.bam T1P_H3K27ac_hg38.sam samtools sort -O bam -o T1P_H3K27ac_hg38_sorted.bam T1P_H3K27ac_hg38.bam samtools index T1P_H3K27ac_hg38_sorted.bam samtools view -Sb -o T1P_HA_hg38.bam T1P_H3K27ac_hg38.sam samtools sort -O bam -o T1P_HA_hg38_sorted.bam T1P_HA_hg38.bam samtools index T1P_HA_hg38_sorted.bam samtools view -Sb -o T1P_IgG_hg38.bam T1P_IgG_hg38.sam samtools sort -O bam -o T1P_IgG_hg38_sorted.bam T1P_IgG_hg38.bam samtools index T1P_IgG_hg38_sorted.bam samtools view -Sb -o T1P_P2F3_hg38.bam T1P_P2F3_hg38.sam samtools sort -O bam -o T1P_P2F3_hg38_sorted.bam T1P_P2F3_hg38.bam samtools index T1P_P2F3_hg38_sorted.bam samtools view -Sb -o T1P_P2F3_hg38.bam T1P_P2F3_hg38.sam samtools sort -O bam -o T1P_P2F3_hg38_sorted.bam T1P_P2F3_hg38.bam samtools index T1P_P2F3_hg38_sorted.bam samtools view -Sb -o T2P_H3K27ac_hg38.bam T2P_H3K27ac_hg38.sam samtools sort -O bam -o T2P_H3K27ac_hg38_sorted.bam T2P_H3K27ac_hg38.bam samtools index T2P_H3K27ac_hg38_sorted.bam samtools view -Sb -o T2P_HA_hg38.bam T2P_HA_hg38.sam samtools sort -O bam -o T2P_HA_hg38_sorted.bam T2P_HA_hg38.bam samtools index T2P_HA_hg38_sorted.bam samtools view -Sb -o T2P_IgG_hg38.bam T2P_IgG_hg38.sam samtools sort -O bam -o T2P_IgG_hg38_sorted.bam T2P_IgG_hg38.bam samtools index T2P_IgG_hg38_sorted.bam T2P samtools view -Sb -o T2P_P2F3_hg38.bam T2P_P2F3_hg38.sam samtools sort -O bam -o T2P_P2F3_hg38_sorted.bam T2P_P2F3_hg38.bam samtools index T2P_P2F3_hg38_sorted.bam