# R script for Peak Model
#  -- generated by MACS
p <- c(0.028087482231242186,0.03304409674263786,0.0378395205382158,0.04186928843365944,0.04650352151341963,0.04656396803185128,0.04688634946348678,0.045959502847534736,0.04579831213171699,0.045052805071059916,0.045334888823740975,0.04507295391053714,0.04487146551576496,0.04537518650269541,0.045133400428968795,0.044911763194719394,0.044911763194719394,0.045677419094853684,0.04606024704492083,0.04642292615551076,0.045818460971194214,0.045697567934330906,0.045959502847534736,0.04551622837903594,0.04561697257642203,0.04565727025537646,0.04549607953955872,0.04559682373694481,0.045193846947400446,0.04489161435524217,0.045314739984263754,0.044911763194719394,0.044992358552628266,0.04583860981067143,0.045556526057990376,0.04606024704492083,0.045899056329103086,0.04656396803185128,0.047148284376690615,0.0472490285740767,0.047208730895122265,0.047490814647803324,0.04726917741355392,0.046785605266100684,0.04730947509250836,0.04662441455028294,0.046302033118647445,0.04573786561328534,0.04521399578687767,0.045899056329103086,0.04634233079760189,0.046040098205443615,0.04599980052648917,0.04634233079760189,0.04618114008178414,0.046584116871328504,0.04676545642662347,0.046584116871328504,0.046463223834465196,0.04571771677380812,0.04517369810792323,0.0450326562315827,0.04543563302112707,0.044911763194719394,0.0450326562315827,0.045113251589491574,0.04535503766321819,0.04537518650269541,0.04539533534217263,0.04549607953955872,0.04561697257642203,0.04620128892126136,0.0461408424028297,0.04670500990819181,0.04662441455028294,0.04648337267394241,0.04660426571080572,0.04674530758714625,0.04753111232675776,0.047349772771462795,0.04696694482139565,0.04682590294505512,0.04628188427917023,0.04597965168701196,0.04565727025537646,0.04585875865014865,0.04551622837903594,0.04573786561328534,0.04535503766321819,0.04561697257642203,0.04628188427917023,0.04648337267394241,0.0463624796370791,0.04648337267394241,0.04690649830296399,0.04640277731603354,0.046866200624009556,0.046785605266100684,0.046302033118647445,0.04599980052648917,0.04585875865014865,0.045334888823740975,0.04573786561328534,0.0461408424028297,0.0459192051685803,0.04632218195812467,0.04622143776073857,0.046241586600215795,0.046100544723875266,0.046926647142441213,0.04662441455028294,0.04751096348728054,0.04706768901878174,0.04656396803185128,0.04626173543969301,0.04618114008178414,0.04612069356335249,0.045758014452762556,0.0463624796370791,0.046100544723875266,0.04662441455028294,0.04660426571080572,0.04698709366087287,0.04722887973459949,0.047712451882052725,0.047692303042575504,0.047208730895122265,0.047369921610940016,0.046785605266100684,0.046302033118647445,0.04599980052648917,0.04557667489746759,0.04541548418164985,0.04501250739210548,0.04466997712099277,0.044972209713151044,0.04539533534217263,0.045556526057990376,0.04620128892126136,0.046926647142441213,0.04640277731603354,0.046302033118647445,0.046725158747669034,0.046866200624009556,0.047007242500350085,0.04682590294505512,0.04690649830296399,0.04674530758714625,0.04664456338976016,0.046382628476556324,0.047007242500350085,0.04716843321616783,0.046725158747669034,0.04682590294505512,0.04696694482139565,0.04670500990819181,0.04616099124230692,0.04616099124230692,0.04664456338976016,0.04662441455028294,0.04674530758714625,0.04688634946348678,0.04730947509250836,0.04710798669773618,0.04732962393198558,0.047490814647803324,0.04795423795577934,0.04819602402950596,0.04753111232675776,0.04662441455028294,0.04652367035289685,0.046302033118647445,0.046241586600215795,0.04618114008178414,0.04656396803185128,0.04650352151341963,0.046382628476556324,0.0459192051685803,0.04654381919237407,0.047712451882052725,0.04710798669773618,0.04718858205564505,0.0472490285740767,0.04787364259787047,0.047490814647803324,0.04775274956100716,0.048054982153165435,0.04843781010323258,0.048397512424278144,0.047712451882052725,0.048397512424278144,0.04849825662166423,0.04841766126375536,0.04853855430061867,0.04819602402950596,0.04793408911630213,0.04795423795577934,0.04817587519002874,0.04841766126375536,0.04849825662166423,0.04807513099264265,0.04841766126375536,0.048679596176959196,0.04835721474532371,0.048679596176959196,0.048115428671597085,0.048054982153165435,0.047571410005712196,0.04664456338976016,0.04648337267394241,0.04654381919237407,0.04626173543969301,0.045899056329103086,0.045878907489625864,0.04612069356335249,0.04708783785825896,0.04702739133982731,0.04704754017930452,0.047712451882052725,0.04865944733748198,0.048961679929640255,0.049505698595525144,0.04942510323761627,0.04908257296650356,0.048961679929640255,0.04904227528754913,0.048961679929640255,0.049384805558661836,0.048820638053299725,0.04821617286898318,0.04781319607943881,0.04767215420309829,0.04829676822689205,0.04833706590584649,0.04793408911630213,0.04795423795577934,0.04849825662166423,0.048478107782187016,0.04914301948493521,0.04906242412702634,0.049928824224546725,0.049122870645458,0.04886093573225416,0.04910272180598078,0.04928406136127574,0.048961679929640255,0.0494855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m <- 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ycorr <- 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altd  <- c(88)
x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf('H526_ASCL2_S14_R1_001.fastq.gz_model.pdf',height=6,width=6)
plot(x,p,type='l',col=c('red'),main='Peak Model',xlab='Distance to the middle',ylab='Percentage')
lines(x,m,col=c('blue'))
legend('topleft',c('forward tags','reverse tags'),lty=c(1,1,1),col=c('red','blue'))
plot(xcorr,ycorr,type='l',col=c('black'),main='Cross-Correlation',xlab='Lag between + and - tags',ylab='Correlation')
abline(v=altd,lty=2,col=c('red'))
legend('topleft','alternative lag(s)',lty=2,col='red')
legend('right','alt lag(s) : 88',bty='n')
dev.off()