#!/usr/bin/env bash

#SBATCH --cpus-per-task=16
#SBATCH --time=48:00:00

module load EBModules SAMtools

samtools view -b KLM1_clone13.sam > KLM1_clone13.bam
samtools sort -o KLM1_clone13_sort.bam KLM1_clone13.bam
samtools index KLM1_clone13_sort.bam